I finished getting my computer back to almost normal. I think I figured out that it deleted all of my user data, but I still don't know why. It came realy close to recovering everything less some pictures and an album or two, which I think I might be able to recover from an iTunes backup I did a couple of weeks ago as I haven't bought anything new in the last three weeks.
I guess it could be worse.
Computer: 1 Album and all the pictures I took in 2005
Me: Working computer and most of my other data